分子流行病学和分子进化流行病学
上QQ阅读APP看书,第一时间看更新

参考文献

[1]POSADA D, BUCKLEY R. Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratiotests[J].Systematic Biology, 2008, 53 (5): 793-808.
[2]SHI Y, JIANG H. rSeqDiff: detecting differential isoform expression from RNA-seq data using hierarchical likelihood ratio test[J]. PloS One, 2013, 8 (11): e79448.
[3]AKAIKE H. A new look at the statistical model identification[J]. IEEE Transactions on Automatic Control,1974,19(6):716-723.
[4]FINDLEY DF. Counterexamples to parsimony and BIC[J]. Annals of the Institute of Statistical Mathematics,1991,43(3):505-514.
[5]SOKAL RR, ROHLF FJ. The comparison of dendrograms by objective methods[J].Taxon,1962,11(2):33-40.
[6]KUHNER MK, FELSENSTEIN J. A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates[J]. Mol Bio Evol,1994,11(3):459-468.
[7]KUMAR S, STECHER G, TAMURA K. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets[J]. Mol Bio Evol, 2016, 33 (7): 1870-1874.
[8]FARRIS JS. Methods for computing wagner trees[J]. Syst Zool,1970,19(1):83-92.
[9]FITCH WM. Toward defining the course of evolution:minimum change for a specified tree topology[J]. Syst Zool,1971,20(4):406-416.
[10]YANG, Z.H. Computational molecular evolution[M]. London: Oxford University Press, 2006.
[11]CANTOR J, JUKES T. Mammalian protein metabolism[M]. New York: Academic Press, 1969.
[12]DAY WHE. Properties of the nearest neighbor interchange metric for trees of small size[J]. Journal of Theoretical Biology,1983,101(2):275-288.
[13]WILGENBUSCH JC, Swofford D. Inferring evolutionary trees with PAUP[J]. Current protocols in bioinformatics,2003,Chapter 6:Unit 6.4.
[14]陈铭.生物信息学[M]. 2版.北京:科学出版社,2012.
[15]李霞,雷健波.生物信息学[M].2版.北京:人民卫生出版社,2015.
[16]黄原.分子系统发生学[M].北京:科学出版社,2012.
[17]YANG Z.Computational molecular evolution[M]. London:Oxford university press,2006.
[18]KUMAR S, STECHER G, TAMURA K. MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets[J]. Mol Biol Evol, 2016, 33 (7): 1870-1874.
[19]GUINDON S, DUFAYARD JF, LEFORT V, et al. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0[J]. Syst Biol, 2010, 59 (3): 307-321.
[20]RETIEF JD. phylogenetic analysis using PHYLIP[J]. Methods Mol Biol,2000,132:243-258.